Package | Description |
---|---|
de.unirostock.sems.bives.ds.crn | |
de.unirostock.sems.bives.ds.ontology |
Modifier and Type | Field and Description |
---|---|
SBOTerm |
CRNSubstanceRef.modTermA
The optional modification terms in versions A/B.
|
SBOTerm |
CRNSubstanceRef.modTermB
The optional modification terms in versions A/B.
|
Modifier and Type | Method and Description |
---|---|
void |
CRNReaction.addInputA(CRNSubstance subst,
SBOTerm sbo)
Add a reactant of this reaction in its original version.
|
void |
CRNReaction.addInputB(CRNSubstance subst,
SBOTerm sbo)
Add a reactant of this reaction in its modified version.
|
void |
CRNReaction.addModA(CRNSubstance subst,
SBOTerm sbo)
Adds the modifier of this reaction in its original version.
|
void |
CRNReaction.addModB(CRNSubstance subst,
SBOTerm sbo)
Add a modifier of this reaction in its modified version.
|
void |
CRNReaction.addOutputA(CRNSubstance subst,
SBOTerm sbo)
Add a product of this reaction in its original version.
|
void |
CRNReaction.addOutputB(CRNSubstance subst,
SBOTerm sbo)
Add a product of this reaction in its modified version.
|
void |
CRNSubstanceRef.setSboA(SBOTerm modTermA)
Sets the SBOTerm as defined in the original version.
|
void |
CRNSubstanceRef.setSboB(SBOTerm modTermB)
Sets the SBOTerm as defined in the modified version.
|
Constructor and Description |
---|
CRNSubstanceRef(CRNSubstance subst,
boolean flagA,
boolean flagB,
SBOTerm modTermA,
SBOTerm modTermB)
Instantiates a new substance reference.
|
Modifier and Type | Method and Description |
---|---|
static SBOTerm |
SBOTerm.createInhibitor()
Creates a dummy inhibitor.
|
static SBOTerm |
SBOTerm.createStimulator()
Creates a dummy stimulator.
|
Modifier and Type | Method and Description |
---|---|
static boolean |
SBOTerm.sameModifier(SBOTerm modTermA,
SBOTerm modTermB)
Check if modifiers are equal (in terms of chemical reaction networks).
|
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.