Package | Description |
---|---|
de.unirostock.sems.bives.algorithm | |
de.unirostock.sems.bives.ds.crn | |
de.unirostock.sems.bives.ds.graph |
Modifier and Type | Field and Description |
---|---|
protected CRN |
GraphProducer.crn
The chemical reaction network.
|
Modifier and Type | Method and Description |
---|---|
CRN |
GraphProducer.getCRN()
Gets the chemical reaction network graph.
|
Constructor and Description |
---|
CRNCompartment(CRN crn,
String labelA,
String labelB,
de.unirostock.sems.xmlutils.ds.DocumentNode docA,
de.unirostock.sems.xmlutils.ds.DocumentNode docB)
Instantiates a new compartment.
|
CRNReaction(CRN crn,
String labelA,
String labelB,
de.unirostock.sems.xmlutils.ds.DocumentNode docA,
de.unirostock.sems.xmlutils.ds.DocumentNode docB,
CRNCompartment compartmentA,
CRNCompartment compartmentB,
boolean reversible)
Instantiates a new cRN reaction.
|
CRNSubstance(CRN crn,
String labelA,
String labelB,
de.unirostock.sems.xmlutils.ds.DocumentNode docA,
de.unirostock.sems.xmlutils.ds.DocumentNode docB,
CRNCompartment compartmentA,
CRNCompartment compartmentB)
Instantiates a new substance in a chemical reaction network.
|
Modifier and Type | Method and Description |
---|---|
String |
GraphTranslatorGraphML.translate(CRN crn) |
String |
GraphTranslatorDot.translate(CRN crn) |
String |
GraphTranslatorJson.translate(CRN crn) |
abstract Object |
GraphTranslator.translate(CRN crn)
Translate a chemical reaction network.
|
Copyright © 2014 SEMS project @ University of Rostock. All rights reserved.