Uses of Class
de.unirostock.sems.bives.ds.rn.ReactionNetworkCompartment
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Packages that use ReactionNetworkCompartment Package Description de.unirostock.sems.bives.ds.rn -
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Uses of ReactionNetworkCompartment in de.unirostock.sems.bives.ds.rn
Methods in de.unirostock.sems.bives.ds.rn that return ReactionNetworkCompartment Modifier and Type Method Description ReactionNetworkCompartment
ReactionNetwork. getCompartment(de.unirostock.sems.xmlutils.ds.TreeNode node)
Gets a compartment.ReactionNetworkCompartment
ReactionNetworkReaction. getCompartment()
Gets the compartment.ReactionNetworkCompartment
ReactionNetworkSubstance. getCompartment()
Gets the compartment.Methods in de.unirostock.sems.bives.ds.rn that return types with arguments of type ReactionNetworkCompartment Modifier and Type Method Description Collection<ReactionNetworkCompartment>
ReactionNetwork. getCompartments()
Gets the compartments.Methods in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkCompartment Modifier and Type Method Description void
ReactionNetwork. setCompartment(de.unirostock.sems.xmlutils.ds.TreeNode node, ReactionNetworkCompartment compartment)
Adds a compartment.void
ReactionNetworkReaction. setCompartmentA(ReactionNetworkCompartment compartment)
Sets the compartment in original version.void
ReactionNetworkSubstance. setCompartmentA(ReactionNetworkCompartment compartment)
Sets the compartment in original version.void
ReactionNetworkReaction. setCompartmentB(ReactionNetworkCompartment compartment)
Sets the compartment in modified version.void
ReactionNetworkSubstance. setCompartmentB(ReactionNetworkCompartment compartment)
Sets the compartment in modified version.Constructors in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkCompartment Constructor Description ReactionNetworkReaction(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB, boolean reversible)
Instantiates a new ReactionNetwork reaction.ReactionNetworkSubstance(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB)
Instantiates a new substance in a reaction network.
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