Uses of Class
de.unirostock.sems.bives.ds.rn.ReactionNetworkSubstance
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Packages that use ReactionNetworkSubstance Package Description de.unirostock.sems.bives.ds.rn -
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Uses of ReactionNetworkSubstance in de.unirostock.sems.bives.ds.rn
Fields in de.unirostock.sems.bives.ds.rn declared as ReactionNetworkSubstance Modifier and Type Field Description ReactionNetworkSubstance
ReactionNetworkSubstanceRef. subst
The substance.Methods in de.unirostock.sems.bives.ds.rn that return ReactionNetworkSubstance Modifier and Type Method Description ReactionNetworkSubstance
ReactionNetwork. getSubstance(de.unirostock.sems.xmlutils.ds.TreeNode node)
Gets a substance.ReactionNetworkSubstance
ReactionNetworkSubstanceRef. getSubstance()
Gets the referenced substance.Methods in de.unirostock.sems.bives.ds.rn that return types with arguments of type ReactionNetworkSubstance Modifier and Type Method Description Collection<ReactionNetworkSubstance>
ReactionNetwork. getSubstances()
Gets the substances.Methods in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkSubstance Modifier and Type Method Description void
ReactionNetworkReaction. addInputA(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a reactant of this reaction in its original version.void
ReactionNetworkReaction. addInputB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a reactant of this reaction in its modified version.void
ReactionNetworkReaction. addModA(ReactionNetworkSubstance subst, SBOTerm sbo)
Adds the modifier of this reaction in its original version.void
ReactionNetworkReaction. addModB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a modifier of this reaction in its modified version.void
ReactionNetworkReaction. addOutputA(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a product of this reaction in its original version.void
ReactionNetworkReaction. addOutputB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a product of this reaction in its modified version.void
ReactionNetwork. setSubstance(de.unirostock.sems.xmlutils.ds.TreeNode node, ReactionNetworkSubstance subst)
Adds a substance.Constructors in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetworkSubstance Constructor Description ReactionNetworkSubstanceRef(ReactionNetworkSubstance subst, boolean flagA, boolean flagB, SBOTerm modTermA, SBOTerm modTermB)
Instantiates a new substance reference.
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