Uses of Class
de.unirostock.sems.bives.ds.ontology.SBOTerm
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Packages that use SBOTerm Package Description de.unirostock.sems.bives.ds.ontology de.unirostock.sems.bives.ds.rn -
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Uses of SBOTerm in de.unirostock.sems.bives.ds.ontology
Methods in de.unirostock.sems.bives.ds.ontology that return SBOTerm Modifier and Type Method Description static SBOTerm
SBOTerm. createInhibitor()
Creates a dummy inhibitor.static SBOTerm
SBOTerm. createStimulator()
Creates a dummy stimulator.Methods in de.unirostock.sems.bives.ds.ontology with parameters of type SBOTerm Modifier and Type Method Description static boolean
SBOTerm. sameModifier(SBOTerm modTermA, SBOTerm modTermB)
Check if modifiers are equal (in terms of chemical reaction networks). -
Uses of SBOTerm in de.unirostock.sems.bives.ds.rn
Fields in de.unirostock.sems.bives.ds.rn declared as SBOTerm Modifier and Type Field Description SBOTerm
ReactionNetworkSubstanceRef. modTermA
The optional modification terms in original doc.SBOTerm
ReactionNetworkSubstanceRef. modTermB
The optional modification terms in modified doc.Methods in de.unirostock.sems.bives.ds.rn with parameters of type SBOTerm Modifier and Type Method Description void
ReactionNetworkReaction. addInputA(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a reactant of this reaction in its original version.void
ReactionNetworkReaction. addInputB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a reactant of this reaction in its modified version.void
ReactionNetworkReaction. addModA(ReactionNetworkSubstance subst, SBOTerm sbo)
Adds the modifier of this reaction in its original version.void
ReactionNetworkReaction. addModB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a modifier of this reaction in its modified version.void
ReactionNetworkReaction. addOutputA(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a product of this reaction in its original version.void
ReactionNetworkReaction. addOutputB(ReactionNetworkSubstance subst, SBOTerm sbo)
Add a product of this reaction in its modified version.void
ReactionNetworkSubstanceRef. setSboA(SBOTerm modTermA)
Sets the SBOTerm as defined in the original version.void
ReactionNetworkSubstanceRef. setSboB(SBOTerm modTermB)
Sets the SBOTerm as defined in the modified version.Constructors in de.unirostock.sems.bives.ds.rn with parameters of type SBOTerm Constructor Description ReactionNetworkSubstanceRef(ReactionNetworkSubstance subst, boolean flagA, boolean flagB, SBOTerm modTermA, SBOTerm modTermB)
Instantiates a new substance reference.
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