Uses of Class
de.unirostock.sems.bives.ds.rn.ReactionNetwork
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Packages that use ReactionNetwork Package Description de.unirostock.sems.bives.algorithm de.unirostock.sems.bives.ds.graph de.unirostock.sems.bives.ds.rn -
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Uses of ReactionNetwork in de.unirostock.sems.bives.algorithm
Fields in de.unirostock.sems.bives.algorithm declared as ReactionNetwork Modifier and Type Field Description protected ReactionNetwork
GraphProducer. rn
The reaction network.Methods in de.unirostock.sems.bives.algorithm that return ReactionNetwork Modifier and Type Method Description ReactionNetwork
GraphProducer. getCRN()
Deprecated.As of 1.3.3 replaced byGraphProducer.getReactionNetwork()
ReactionNetwork
GraphProducer. getReactionNetwork()
Gets the reaction network graph. -
Uses of ReactionNetwork in de.unirostock.sems.bives.ds.graph
Methods in de.unirostock.sems.bives.ds.graph with parameters of type ReactionNetwork Modifier and Type Method Description abstract Object
GraphTranslator. translate(ReactionNetwork rn)
Translate a reaction network.String
GraphTranslatorDot. translate(ReactionNetwork rn)
String
GraphTranslatorGraphML. translate(ReactionNetwork rn)
String
GraphTranslatorJson. translate(ReactionNetwork rn)
String
GraphTranslatorSbgnJson. translate(ReactionNetwork rn)
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Uses of ReactionNetwork in de.unirostock.sems.bives.ds.rn
Constructors in de.unirostock.sems.bives.ds.rn with parameters of type ReactionNetwork Constructor Description ReactionNetworkCompartment(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB)
Instantiates a new compartment.ReactionNetworkReaction(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB, boolean reversible)
Instantiates a new ReactionNetwork reaction.ReactionNetworkSubstance(ReactionNetwork rn, String labelA, String labelB, de.unirostock.sems.xmlutils.ds.DocumentNode docA, de.unirostock.sems.xmlutils.ds.DocumentNode docB, ReactionNetworkCompartment compartmentA, ReactionNetworkCompartment compartmentB)
Instantiates a new substance in a reaction network.
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