Class SBMLCompartment

  • All Implemented Interfaces:
    de.unirostock.sems.bives.algorithm.DiffReporter

    public class SBMLCompartment
    extends SBMLGenericIdNameObject
    implements de.unirostock.sems.bives.algorithm.DiffReporter
    The Class SBMLCompartment, a bounded space in which species are located.
    Author:
    Martin Scharm
    • Constructor Detail

      • SBMLCompartment

        public SBMLCompartment​(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                               SBMLModel sbmlModel)
                        throws BivesSBMLParseException
        Instantiates a new SBML compartment.
        Parameters:
        documentNode - the document node encoding this entity in the corresponding XML tree
        sbmlModel - the SBML model
        Throws:
        BivesSBMLParseException - the bives sbml parse exception
    • Method Detail

      • reportModification

        public de.unirostock.sems.bives.markup.MarkupElement reportModification​(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docA,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docB)
        Specified by:
        reportModification in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportInsert

        public de.unirostock.sems.bives.markup.MarkupElement reportInsert()
        Specified by:
        reportInsert in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportDelete

        public de.unirostock.sems.bives.markup.MarkupElement reportDelete()
        Specified by:
        reportDelete in interface de.unirostock.sems.bives.algorithm.DiffReporter