Class SBMLParameter

  • All Implemented Interfaces:
    de.unirostock.sems.bives.algorithm.DiffReporter, de.unirostock.sems.bives.markup.Markup

    public class SBMLParameter
    extends SBMLGenericIdNameObject
    implements de.unirostock.sems.bives.algorithm.DiffReporter, de.unirostock.sems.bives.markup.Markup
    The Class SBMLParameter is used to define a symbol associated with a value; this symbol can then be used in mathematical formulas in a model.
    Author:
    Martin Scharm
    • Constructor Detail

      • SBMLParameter

        public SBMLParameter​(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                             SBMLModel sbmlModel)
                      throws BivesSBMLParseException
        Instantiates a new SBML parameter.
        Parameters:
        documentNode - the document node encoding this entity in the corresponding XML tree
        sbmlModel - the SBML model
        Throws:
        BivesSBMLParseException - the bives sbml parse exception
    • Method Detail

      • getValue

        public double getValue()
        Gets the value.
        Returns:
        the value
      • isConstant

        public boolean isConstant()
        Checks if the parameter is constant.
        Returns:
        true, if is constant
      • markup

        public String markup()
        Specified by:
        markup in interface de.unirostock.sems.bives.markup.Markup
      • reportModification

        public de.unirostock.sems.bives.markup.MarkupElement reportModification​(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docA,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docB)
        Specified by:
        reportModification in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportInsert

        public de.unirostock.sems.bives.markup.MarkupElement reportInsert()
        Specified by:
        reportInsert in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportDelete

        public de.unirostock.sems.bives.markup.MarkupElement reportDelete()
        Specified by:
        reportDelete in interface de.unirostock.sems.bives.algorithm.DiffReporter