Class SBMLGraphProducer
- java.lang.Object
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- de.unirostock.sems.bives.algorithm.GraphProducer
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- de.unirostock.sems.bives.sbml.algorithm.SBMLGraphProducer
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public class SBMLGraphProducer extends de.unirostock.sems.bives.algorithm.GraphProducer
The Class SBMLGraphProducer to create the graphs.- Author:
- Martin Scharm
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Constructor Summary
Constructors Constructor Description SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new SBML graph producer for difference graphs.SBMLGraphProducer(SBMLDocument sbmlDoc)
Instantiates a new SBML graph producer for single document graphs.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
processRnA()
Process Reaction Network of the original document.protected void
processRnB()
Process Reaction Network of the modified document.protected void
produceHierarchyGraph()
protected void
produceReactionNetwork()
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Constructor Detail
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SBMLGraphProducer
public SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new SBML graph producer for difference graphs.- Parameters:
conMgmt
- the connection managersbmlDocA
- the original documentsbmlDocB
- the modified document
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SBMLGraphProducer
public SBMLGraphProducer(SBMLDocument sbmlDoc)
Instantiates a new SBML graph producer for single document graphs.- Parameters:
sbmlDoc
- the SBML document
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Method Detail
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produceReactionNetwork
protected void produceReactionNetwork()
- Specified by:
produceReactionNetwork
in classde.unirostock.sems.bives.algorithm.GraphProducer
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produceHierarchyGraph
protected void produceHierarchyGraph()
- Specified by:
produceHierarchyGraph
in classde.unirostock.sems.bives.algorithm.GraphProducer
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processRnA
protected void processRnA() throws de.unirostock.sems.bives.exception.BivesUnsupportedException
Process Reaction Network of the original document.- Throws:
de.unirostock.sems.bives.exception.BivesUnsupportedException
- the bives unsupported exception
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processRnB
protected void processRnB() throws de.unirostock.sems.bives.exception.BivesUnsupportedException
Process Reaction Network of the modified document.- Throws:
de.unirostock.sems.bives.exception.BivesUnsupportedException
- the bives unsupported exception
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