Class SBMLInitialAssignment

  • All Implemented Interfaces:
    de.unirostock.sems.bives.algorithm.DiffReporter

    public class SBMLInitialAssignment
    extends SBMLSBase
    implements de.unirostock.sems.bives.algorithm.DiffReporter
    The Class SBMLInitialAssignment assigning initial values to entities in a model.
    Author:
    Martin Scharm
    • Constructor Detail

      • SBMLInitialAssignment

        public SBMLInitialAssignment​(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                                     SBMLModel sbmlModel)
                              throws BivesSBMLParseException
        Instantiates a new SBML initial assignment.
        Parameters:
        documentNode - the document node encoding this entity in the corresponding XML tree
        sbmlModel - the SBML model
        Throws:
        BivesSBMLParseException - the bives sbml parse exception
    • Method Detail

      • getSymbol

        public SBMLSBase getSymbol()
        Gets the symbol.
        Returns:
        the symbol
      • getMath

        public de.unirostock.sems.bives.ds.MathML getMath()
        Gets the math.
        Returns:
        the math
      • reportModification

        public de.unirostock.sems.bives.markup.MarkupElement reportModification​(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docA,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docB)
        Specified by:
        reportModification in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportInsert

        public de.unirostock.sems.bives.markup.MarkupElement reportInsert()
        Specified by:
        reportInsert in interface de.unirostock.sems.bives.algorithm.DiffReporter
      • reportDelete

        public de.unirostock.sems.bives.markup.MarkupElement reportDelete()
        Specified by:
        reportDelete in interface de.unirostock.sems.bives.algorithm.DiffReporter