Class SBMLRateRule
- java.lang.Object
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- de.unirostock.sems.bives.sbml.parser.SBMLGenericObject
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- de.unirostock.sems.bives.sbml.parser.SBMLSBase
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- de.unirostock.sems.bives.sbml.parser.SBMLRule
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- de.unirostock.sems.bives.sbml.parser.SBMLRateRule
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- All Implemented Interfaces:
de.unirostock.sems.bives.algorithm.DiffReporter
public class SBMLRateRule extends SBMLRule
The Class SBMLRateRule used to express equations that determine the rates of change of variables.- Author:
- Martin Scharm
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Field Summary
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Fields inherited from class de.unirostock.sems.bives.sbml.parser.SBMLRule
ALGEBRAIC_RULE, ASSIGNMENT_RULE, math, RATE_RULE, type
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Fields inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject
documentNode, sbmlModel
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Constructor Summary
Constructors Constructor Description SBMLRateRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel)
Instantiates a new SBML rate rule.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description SBMLSBase
getVariable()
Gets the variable of interest.de.unirostock.sems.bives.markup.MarkupElement
reportDelete()
de.unirostock.sems.bives.markup.MarkupElement
reportInsert()
de.unirostock.sems.bives.markup.MarkupElement
reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, de.unirostock.sems.bives.algorithm.DiffReporter docA, de.unirostock.sems.bives.algorithm.DiffReporter docB)
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Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLRule
getMath, getRuleType, resolveVariable
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Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLSBase
addOntologyLink, flagMetaModifcations, getAnnotation, getMetaId, getNotes, getOntologyLinks, getSBOTerm
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Methods inherited from class de.unirostock.sems.bives.sbml.parser.SBMLGenericObject
getDocumentNode, getModel
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Constructor Detail
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SBMLRateRule
public SBMLRateRule(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLModel sbmlModel) throws BivesSBMLParseException
Instantiates a new SBML rate rule.- Parameters:
documentNode
- the document node in the corresponding XML treesbmlModel
- the SBML model- Throws:
BivesSBMLParseException
- the bives sbml parse exception
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Method Detail
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getVariable
public SBMLSBase getVariable()
Gets the variable of interest.- Returns:
- the variable
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reportModification
public de.unirostock.sems.bives.markup.MarkupElement reportModification(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, de.unirostock.sems.bives.algorithm.DiffReporter docA, de.unirostock.sems.bives.algorithm.DiffReporter docB)
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reportInsert
public de.unirostock.sems.bives.markup.MarkupElement reportInsert()
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reportDelete
public de.unirostock.sems.bives.markup.MarkupElement reportDelete()
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