Uses of Class
de.unirostock.sems.bives.sbml.parser.SBMLDocument
-
Packages that use SBMLDocument Package Description de.unirostock.sems.bives.sbml.algorithm de.unirostock.sems.bives.sbml.api de.unirostock.sems.bives.sbml.parser -
-
Uses of SBMLDocument in de.unirostock.sems.bives.sbml.algorithm
Methods in de.unirostock.sems.bives.sbml.algorithm that return SBMLDocument Modifier and Type Method Description SBMLDocument
SBMLValidator. getDocument()
Constructors in de.unirostock.sems.bives.sbml.algorithm with parameters of type SBMLDocument Constructor Description SBMLConnector(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new SBML connector.SBMLConnector(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB, boolean allowDifferentIds, boolean careAboutNames, boolean stricterNames)
Instantiates a new SBML connector.SBMLConnectorPreprocessor(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new sBML connector preprocessor.SBMLConnectorPreprocessor(SBMLDocument sbmlDocA, SBMLDocument sbmlDocB, boolean allowDifferentIds, boolean careAboutNames, boolean stricterNames)
Instantiates a new sBML connector preprocessor.SBMLDiffInterpreter(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new SBML diff interpreter.SBMLGraphProducer(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt, SBMLDocument sbmlDocA, SBMLDocument sbmlDocB)
Instantiates a new SBML graph producer for difference graphs.SBMLGraphProducer(SBMLDocument sbmlDoc)
Instantiates a new SBML graph producer for single document graphs. -
Uses of SBMLDocument in de.unirostock.sems.bives.sbml.api
Fields in de.unirostock.sems.bives.sbml.api declared as SBMLDocument Modifier and Type Field Description protected SBMLDocument
SBMLSingle. doc
The doc.protected SBMLDocument
SBMLDiff. doc1
The original document.protected SBMLDocument
SBMLDiff. doc2
The modified document.Constructors in de.unirostock.sems.bives.sbml.api with parameters of type SBMLDocument Constructor Description SBMLDiff(SBMLDocument a, SBMLDocument b)
Instantiates a new SBML differ.SBMLDiff(SBMLDocument a, SBMLDocument b, de.unirostock.sems.bives.algorithm.DiffAnnotator diffAnnotator)
Instantiates a new SBML differ.SBMLSingle(SBMLDocument doc)
Instantiates a new object to study single SBML documents. -
Uses of SBMLDocument in de.unirostock.sems.bives.sbml.parser
Methods in de.unirostock.sems.bives.sbml.parser that return SBMLDocument Modifier and Type Method Description SBMLDocument
SBMLModel. getDocument()
Gets the SBML document.Constructors in de.unirostock.sems.bives.sbml.parser with parameters of type SBMLDocument Constructor Description SBMLModel(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode, SBMLDocument sbmlDocument)
Instantiates a new SBML model.
-