Class SBMLRateRule

  • All Implemented Interfaces:
    de.unirostock.sems.bives.algorithm.DiffReporter

    public class SBMLRateRule
    extends SBMLRule
    The Class SBMLRateRule used to express equations that determine the rates of change of variables.
    Author:
    Martin Scharm
    • Constructor Detail

      • SBMLRateRule

        public SBMLRateRule​(de.unirostock.sems.xmlutils.ds.DocumentNode documentNode,
                            SBMLModel sbmlModel)
                     throws BivesSBMLParseException
        Instantiates a new SBML rate rule.
        Parameters:
        documentNode - the document node in the corresponding XML tree
        sbmlModel - the SBML model
        Throws:
        BivesSBMLParseException - the bives sbml parse exception
    • Method Detail

      • getVariable

        public SBMLSBase getVariable()
        Gets the variable of interest.
        Returns:
        the variable
      • reportModification

        public de.unirostock.sems.bives.markup.MarkupElement reportModification​(de.unirostock.sems.bives.algorithm.SimpleConnectionManager conMgmt,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docA,
                                                                                de.unirostock.sems.bives.algorithm.DiffReporter docB)
      • reportInsert

        public de.unirostock.sems.bives.markup.MarkupElement reportInsert()
      • reportDelete

        public de.unirostock.sems.bives.markup.MarkupElement reportDelete()