A C D F G H M P Q S T 

A

addModel(CrawledModel) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
addModel(CrawledModel) - Method in interface de.unirostock.sems.morre.client.MorreCrawlerInterface
Adds a model to the database
ANNOTATION_MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
ANNOTATION_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
AnnotationResult - Class in de.unirostock.sems.morre.client.dataholder
 
AnnotationResult(float, String, List<String>) - Constructor for class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 

C

CELLML_MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
compareTo(ModelResult) - Method in class de.unirostock.sems.morre.client.dataholder.ModelResult
 
compareTo(PersonResult) - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
compareTo(PublicationResult) - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
CrawledModel - Class in de.unirostock.sems.morre.client.dataholder
 
CrawledModel(String, String, String, Map<String, List<String>>, Map<String, String>, String) - Constructor for class de.unirostock.sems.morre.client.dataholder.CrawledModel
 

D

databaseID - Variable in class de.unirostock.sems.morre.client.dataholder.Model
 
de.unirostock.sems.morre.client - package de.unirostock.sems.morre.client
 
de.unirostock.sems.morre.client.dataholder - package de.unirostock.sems.morre.client.dataholder
 
de.unirostock.sems.morre.client.exception - package de.unirostock.sems.morre.client.exception
 
de.unirostock.sems.morre.client.impl - package de.unirostock.sems.morre.client.impl
 
doAnnotationQuery(String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
doAnnotationQuery(String) - Method in interface de.unirostock.sems.morre.client.Morre
Searches for Annotations on the basis of the gives features The available features can be retrieved by getQueryFeatures
documentURI - Variable in class de.unirostock.sems.morre.client.dataholder.Model
 
doModelQuery(String, FeatureSet) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
doModelQuery(String, FeatureSet) - Method in interface de.unirostock.sems.morre.client.Morre
Performs a more complex query of the given type The available features can be retrieved by getQueryFeatures
doPersonQuery(FeatureSet) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
doPersonQuery(FeatureSet) - Method in interface de.unirostock.sems.morre.client.Morre
Searches for a Person on the basis of the given features The available features can be retrieved by getQueryFeatures

F

FeatureSet - Class in de.unirostock.sems.morre.client
 
FeatureSet() - Constructor for class de.unirostock.sems.morre.client.FeatureSet
 
FeatureSet.Entry<K,V> - Class in de.unirostock.sems.morre.client
 
FeatureSet.Entry(K) - Constructor for class de.unirostock.sems.morre.client.FeatureSet.Entry
 
FeatureSet.Entry(K, V) - Constructor for class de.unirostock.sems.morre.client.FeatureSet.Entry
 
filename - Variable in class de.unirostock.sems.morre.client.dataholder.Model
 

G

getAuthors() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
getDatabaseID() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
getDocumentURI() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
getEmail() - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
getFeatures() - Method in class de.unirostock.sems.morre.client.FeatureSet
 
getFileId() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getFilename() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
getFirstName() - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
getJournal() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
getKey() - Method in class de.unirostock.sems.morre.client.FeatureSet.Entry
 
getLastName() - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
getLatestModelVersion(String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
getLatestModelVersion(String) - Method in interface de.unirostock.sems.morre.client.MorreCrawlerInterface
Returns the latest version of a model as dataholder object
getMetaMap() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getModel() - Method in class de.unirostock.sems.morre.client.dataholder.ModelResult
 
getModelHistory(String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
getModelHistory(String) - Method in interface de.unirostock.sems.morre.client.MorreCrawlerInterface
Returns all available versions of this model as String List
getModelID() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
getModelName() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
getModelType() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getModelVersion(String, String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
getModelVersion(String, String) - Method in interface de.unirostock.sems.morre.client.MorreCrawlerInterface
Returns one specific version of a model as dataholder object
getOrganization() - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
getParentMap() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getPerson() - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
getPublication() - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
getQueryFeatures(String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
getQueryFeatures(String) - Method in interface de.unirostock.sems.morre.client.Morre
Returns the available features for a given query type
getRelatedModelsUri() - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
getRelatedModelsUri() - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
getRelatedModelsUri() - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
getScore() - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
getScore() - Method in class de.unirostock.sems.morre.client.dataholder.ModelResult
 
getScore() - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
getScore() - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
getSynopsis() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
getTitle() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
getUri() - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
getValue() - Method in class de.unirostock.sems.morre.client.FeatureSet.Entry
 
getVersionId() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getXmldoc() - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
getYear() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 

H

HttpMorreClient - Class in de.unirostock.sems.morre.client.impl
 
HttpMorreClient(String) - Constructor for class de.unirostock.sems.morre.client.impl.HttpMorreClient
 

M

Model - Class in de.unirostock.sems.morre.client.dataholder
 
Model(String, String, long, String, String) - Constructor for class de.unirostock.sems.morre.client.dataholder.Model
 
MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
modelID - Variable in class de.unirostock.sems.morre.client.dataholder.Model
 
modelName - Variable in class de.unirostock.sems.morre.client.dataholder.Model
 
modelQuery(String) - Method in class de.unirostock.sems.morre.client.impl.HttpMorreClient
 
modelQuery(String) - Method in interface de.unirostock.sems.morre.client.Morre
Searches for a model on the basis of a simple query
ModelResult - Class in de.unirostock.sems.morre.client.dataholder
 
ModelResult(String, float, String, long, String, String) - Constructor for class de.unirostock.sems.morre.client.dataholder.ModelResult
 
Morre - Interface in de.unirostock.sems.morre.client
Interface for interacting with the MORRE database API
MorreClientException - Exception in de.unirostock.sems.morre.client.exception
 
MorreClientException() - Constructor for exception de.unirostock.sems.morre.client.exception.MorreClientException
 
MorreClientException(String) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreClientException
 
MorreClientException(Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreClientException
 
MorreClientException(String, Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreClientException
 
MorreCommunicationException - Exception in de.unirostock.sems.morre.client.exception
 
MorreCommunicationException() - Constructor for exception de.unirostock.sems.morre.client.exception.MorreCommunicationException
 
MorreCommunicationException(String) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreCommunicationException
 
MorreCommunicationException(Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreCommunicationException
 
MorreCommunicationException(String, Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreCommunicationException
 
MorreCrawlerInterface - Interface in de.unirostock.sems.morre.client
 
MorreException - Exception in de.unirostock.sems.morre.client.exception
The MORRE database interface has thrown an exception, which the client interface can not handle by it self.
MorreException() - Constructor for exception de.unirostock.sems.morre.client.exception.MorreException
 
MorreException(String) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreException
 
MorreException(Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreException
 
MorreException(String, Throwable) - Constructor for exception de.unirostock.sems.morre.client.exception.MorreException
 

P

Person - Class in de.unirostock.sems.morre.client.dataholder
 
Person(String, String, String, String) - Constructor for class de.unirostock.sems.morre.client.dataholder.Person
 
PERSON_MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
PERSON_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
PersonResult - Class in de.unirostock.sems.morre.client.dataholder
 
PersonResult(float, Person, List<String>) - Constructor for class de.unirostock.sems.morre.client.dataholder.PersonResult
 
Publication - Class in de.unirostock.sems.morre.client.dataholder
 
Publication(String, String, String, int, List<Person>) - Constructor for class de.unirostock.sems.morre.client.dataholder.Publication
 
PUBLICATION_MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
PUBLICATION_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 
PublicationResult - Class in de.unirostock.sems.morre.client.dataholder
 
PublicationResult(float, Publication, List<String>) - Constructor for class de.unirostock.sems.morre.client.dataholder.PublicationResult
 

Q

QueryType - Class in de.unirostock.sems.morre.client
 
QueryType() - Constructor for class de.unirostock.sems.morre.client.QueryType
 

S

set(String, String) - Method in class de.unirostock.sems.morre.client.FeatureSet
 
setAuthors(List<Person>) - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
setDatabaseID(long) - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
setDocumentURI(String) - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
setEmail(String) - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
setFileId(String) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setFilename(String) - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
setFirstName(String) - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
setJournal(String) - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
setLastName(String) - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
setMetaMap(Map<String, String>) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setModelID(String) - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
setModelName(String) - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
setModelType(String) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setOrganization(String) - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
setParentMap(Map<String, List<String>>) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setPerson(Person) - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
setPublication(Publication) - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
setRelatedModelsUri(List<String>) - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
setRelatedModelsUri(List<String>) - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
setRelatedModelsUri(List<String>) - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
setScore(float) - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
setScore(float) - Method in class de.unirostock.sems.morre.client.dataholder.ModelResult
 
setScore(float) - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
setScore(float) - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
setSynopsis(String) - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
setTitle(String) - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
setUri(String) - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
setValue(V) - Method in class de.unirostock.sems.morre.client.FeatureSet.Entry
 
setVersionId(String) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setXmldoc(String) - Method in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
setYear(int) - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
SIMPLE_CELLML_MODEL_QUERY - Static variable in class de.unirostock.sems.morre.client.QueryType
 

T

toString() - Method in class de.unirostock.sems.morre.client.dataholder.AnnotationResult
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.Model
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.ModelResult
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.Person
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.PersonResult
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.Publication
 
toString() - Method in class de.unirostock.sems.morre.client.dataholder.PublicationResult
 
TYPE_CELLML - Static variable in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
TYPE_SBML - Static variable in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
TYPE_SEDML - Static variable in class de.unirostock.sems.morre.client.dataholder.CrawledModel
 
A C D F G H M P Q S T 

Copyright © 2013 SEMS (Simulation Experiment Management for Systems Biology). All rights reserved.